TFM-Explorer Transcription Factor Matrix Explorer
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analysis Cluster Genome genome analysis Genome Explorer

TFM-Explorer Description

TFM-Explorer is a program for analysing regulatory regions of eukaryotic genomes. It takes a set of coregulated gene sequences, and search for locally overrepresented transcription factor biding sites. The algorithm proceeds in two steps: · scans sequences for detecting all potential transcription factor binding sites, using weight matrices from JASPAR or TRANSFAC · extracts significant clusters (region of the input sequences associated with a factor) by calculated a score function TFM-Explorer allows also to visualize the result clusters and their putative transcription factor biding sites on the input sequences, and to search for cis-regulatory modules. Get TFM-Explorer and give it a go to see what it can actually do for you!

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