ResSpecies Genotype CheckerA desktop application for checking the inheritance consistency of pedigree/genotype data. | |
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ResSpecies Genotype Checker Ranking & Summary
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- License:
- GPL
- Publisher Name:
- Roslin Institute
- Operating Systems:
- Windows All
- File Size:
- 836 KB
ResSpecies Genotype Checker Tags
- checker consistency checker consistency generate pedigree pet pedigree pedigree Pedigree Templates consistency issue locate consistency issue genotype plot genotype data view genotype data genotype data visualization prototype-based inheritance inheritance view genotype genotype viewer analyze genotype draw pedigree tag SNP genotype Check Consistency Backup consistency consistency monitor phase genotype data Check file consistency system file consistency pedigree diagrams creator check Mendelian consistency analyze plant pedigree data plant pedigree data analysis explore plant pedigree data genotype analysis analyze pedigree implement genotype effect Genotype Checker Inheritance Consistency Genotype dataset genotype data analysis numerical genotype consistency check
ResSpecies Genotype Checker Description
ResSpecies Genotype Checker is a desktop tool for identifying likely data errors in pedigree/genotype datasets and to assist data cleansing. Datapoint errors in pedigree genotype datasets are difficult to identify and adversely affect downstream genetic analyses. Errors that are inconsistent with the rules of Mendelian inheritance typically invalidate linkage analysis algorithms, and cause such analyses to fail. Genotype errors may arise from a variery of systematic or sporadic errors in either the genotyping assay, or in recording the pedigree or genotype information. By applying an inheritance-checking algorithm for markers across the pedigree and visualising the inheritance data in an exploratory user interface, GenotypeChecker allows the sources of data inconsistency can be resolved. GenotypeChecker displays the marker genotypes for individuals in the pedigree in tabular form (individual versus marker). Applying the inheritance-checking algorithm across the pedigree for each marker both infers missing genotype data and highlights genotypes that are not consistent with the basic rule that an offspring's genotype must derive from alleles inherited from each parent. Give ResSpecies Genotype Checker a try to fully assess its capabilities!
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