CodonW It was designed to simplify Multivariate Analysis (MVA) of codon usage
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CodonW Tags

analysis simulation codon sequence multivariate multivariate analysis mRNA codon Codon Genetic code simulation Generate codon table Genetic code heap usage analysis view multivariate dataset codon model elevator usage analysis evaluating codon usage nested multivariate analysis multivariate estimation multivariate space simplify CNV analysis multivariate nonlinear data multivariate analytical softwar multivariate data analysis MVA multivariate regression multivariate curve resolution

CodonW Description

The CodonW application was designed to be a package for codon usage analysis. It was designed to simplify Multivariate Analysis (MVA) of codon usage. The MVA method employed in CodonW is correspondence analysis (COA) (the most popular MVA method for codon usage analysis). CodonW can generate a COA for codon usage, relative synonymous codon usage or amino acid usage. Additional analyses of codon usage include investigation of optimal codons, codon and dinucleotide bias, and/or base composition. CodonW also has the capacity to analysis sequences encoded by genetic codes other than the universal code. Main features: Written in ANSI compliant C Menu driven Extensive number of command line options Genetic code independent Calculates the codon usage indices Calculates amino acid indices Calculates correspondence analysis Correspondence analysis Calculates gene parameters Can conceptually translates sequences to protein Reformats sequence data Human or machine readable output Generates tables of codon, amino acid, or RSCU usage Can even help you learn the Genetic code.

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