gaalLibrary that implements an Enhanced Suffix Array and a Linearized Suffix Tree | |
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- License:
- Apache
- Publisher Name:
- Alex Kislev
- Publisher web site:
- http://code.google.com/u/105544942444950935699/
- Operating Systems:
- Mac OS X
- File Size:
- 478 KB
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gaal Description
gaal (Gappy Aligner) is a free and open-source Java library that implements an Enhanced Suffix Array and a Linearized Suffix Tree. gaal was developed with a flexible API in mind and allows for any type of underlying sequences, sorting algorithms etc. to be used. Moreover, gaal provides an implementation of a so-called Embedded Suffix Tree, which could be used to discover discontinuous (gappy) repeats. Finally, a basic vector-space-model-based aligner is included for repeat alignment.
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